PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3044220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 348aa    MW: 36817.6 Da    PI: 8.5879
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3044220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.92.2e-671232863154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 
                       gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++a  ++ a a +  +++ +k++r   s++++++s+t++s++
  Lj2g3v3044220.1 123 GGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAPGAAAAVAGSsgSTSGTKKPRLVGSQTNTTASHTSTSNT 216
                      5889**********************************************998887666555444458899999**99**************** PP

           DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++++etss          +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle+
  Lj2g3v3044220.1 217 TPPRSFETSSshqdasfketMPGQVRAPAVFKCVRVTAVEDGKDEYAYQAVVKIGGHVFKGFLYDQGLEN 286
                      ********999********************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-61125285IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.1E-27127169IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-29237284IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGMFVVAPAS SFHHHHHLQQ HHHHIHDNNN SNNPIISDPH SLNPATALGV GVIPLLTAID  60
NDNATTNMLS RRNQGIQFWQ EQQTHHHHQG HYMKNKQGNL LEHNVSSGNL VHLGGGGDAT  120
TTGGTTTCQD CGNQAKKDCT NRRCRTCCKS RGFDCPTHVK STWVPAARRR ERQLMTAPGA  180
AAAVAGSSGS TSGTKKPRLV GSQTNTTASH TSTSNTTPPR SFETSSSHQD ASFKETMPGQ  240
VRAPAVFKCV RVTAVEDGKD EYAYQAVVKI GGHVFKGFLY DQGLENRDVY SNFSELHLGG  300
GSGGVGGTVG GGGRNGASSS SPMMDPSDVY AASGGGLLGG SSYGNPIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575625.11e-138PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-83LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLI1JIY01e-138I1JIY0_SOYBN; Uncharacterized protein
STRINGGLYMA02G44860.21e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-69Lateral root primordium (LRP) protein-related